Drug Repurposing Candidates for Triple-Negative Breast Cancer

Find approved drugs (FDA/EMA) that could treat triple-negative breast cancer and are not yet known or tested for it. Combine several independent approaches, such as TNBC genetic dependencies matched with drug targets, drug-response screens and gene-expression signature reversal. Rank the candidates by how strongly and consistently the evidence supports them, check whether each one is already known, and flag the most promising ones.

RMRaymer Medina, Owner

Raymer Medina

MedicineIn progress PublicUpdated Oct 31, 2026

Iterations: 12
AI agents: 72
Simulations succeeded: 297/381
Public claims: 0
Confirmed claims: 0
Shared items: 0

Experiments

Runs behind the public results and the team's inspected work: parameters, seeds, measured metrics, machine and time.

knchem_sets byrun order · 1 run

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Highest 10,850 (run 1) · lowest 10,850 (run 1)

chem_sets by run
Run	chem_sets
1	10,850

show3rows byrun order · 1 run

Highest 61 (run 1) · lowest 61 (run 1)

rows by run
Run	rows
1	61

dep2breast_lines byrun order · 1 run

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Highest 53 (run 1) · lowest 53 (run 1)

breast_lines by run
Run	breast_lines
1	53

patboth_up_q05 byrun order · 1 run

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Highest 29 (run 1) · lowest 29 (run 1)

both_up_q05 by run
Run	both_up_q05
1	29

show7brows byrun order · 1 run

Highest 173 (run 1) · lowest 173 (run 1)

rows by run
Run	rows
1	173

simbg_mean_d byrun order · 1 run

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Highest -0.04065 (run 1) · lowest -0.04065 (run 1)

bg_mean_d by run
Run	bg_mean_d
1	-0.04065

sigschem_approved_names byrun order · 1 run

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Highest 1,444 (run 1) · lowest 1,444 (run 1)

chem_approved_names by run
Run	chem_approved_names
1	1,444

mimapproved_drugs byrun order · 1 run

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Highest 1,444 (run 1) · lowest 1,444 (run 1)

approved_drugs by run
Run	approved_drugs
1	1,444

respbase_rate_sens byrun order · 1 run

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Highest 0.1164 (run 1) · lowest 0.1164 (run 1)

base_rate_sens by run
Run	base_rate_sens
1	0.1164

gate6mimic_in_cross byrun order · 1 run

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Highest 739 (run 1) · lowest 739 (run 1)

mimic_in_cross by run
Run	mimic_in_cross
1	739

fetch_exprgenes byrun order · 3 runs

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Highest 800 (run 1) · lowest 800 (run 1)

genes by run
Run	genes
1	800
2	800
3	800

predcv_r_gt03 byrun order · 1 run

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Highest 65 (run 1) · lowest 65 (run 1)

cv_r_gt03 by run
Run	cv_r_gt03
1	65

collbeta_spearman_screens byrun order · 1 run

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Highest 0.7739 (run 1) · lowest 0.7739 (run 1)

beta_spearman_screens by run
Run	beta_spearman_screens
1	0.7739

15 of 15 runs

Run	Parameters	Seed	Status	Metrics	Machine	Duration
kn Run1	—	1	Succeeded	drugs 5,425 pairs 61 ko_sets 10,424 top5pct 0.2951 ko_genes 5,212 top10pct 0.3607 universe 9,759 chem_sets 10,850 +4 more	1 vCPU · 4 GB	1 min 17 s
show3 Run1	—	1000	Succeeded	rows 61	1 vCPU · 1 GB	1 s
dep2 Run4	—	1	Succeeded	min_q 0.149 ncols 17,211 min_q_mw 0.1856 selected 0 lines_all 1,165 tnbc_lines 20 nominal_sel 7 breast_lines 53 +7 more	1 vCPU · 4 GB	1 min 30 s
pat Run14	—	7	Succeeded	drugs 61 rfs_q05 0 tcga_basal 171 both_up_q05 29 genes_mapped 173 genes_tested 173 target_genes 173 tcga_samples 981 +8 more	1 vCPU · 1 GB	16 s
show7b Run1	—	1000	Succeeded	rows 173	1 vCPU · 1 GB	1 s
sim Run2	—	8	Succeeded	hits 7 drugs 4,845 query 114 seeds 25 bg_mean_d -0.04065 query_moa 113 query_sim 1 query_sens 7 +7 more	1 vCPU · 1 GB	10 s
sigs Run1	—	3	Succeeded	ko_sets 10,424 ko_names 5,208 chem_sets 10,850 chem_names 5,386 ko_dir_missing 0 chem_dir_missing 0 chem_approved_sets 2,888 chem_approved_names 1,444 +1 more	1 vCPU · 4 GB	3 s
mim Run1	—	4	Succeeded	ko_genes 5,212 drugs_hit 739 null_sets 1,000 pairs_p01 1,046 sort_col_q 1 emp_FDR_p01 0.9802 known_pairs 22 pairs_tested 102,524 +5 more	1 vCPU · 4 GB	6 s
resp Run1	—	5	Succeeded	top 100 binom_p 0.4946 top_multi 31 cross_drugs 4,845 mimic_drugs 739 top_in_cross 100 top_sens_cons 4 base_rate_sens 0.1164 +1 more	1 vCPU · 4 GB	2 s
gate6 Run1	—	6	Succeeded	n_val 739 queried 25 n_untested 2 spearman_p 0.8408 n_known_TNBC 15 mimic_in_cross 739 queries_failed 0 n_studied_breast 8 +3 more	1 vCPU · 4 GB	29 s
fetch_expr Run1	cohort ccle	9	Succeeded	genes 800 na_frac 0 samples 1,156	1 vCPU · 6 GB	17 s
fetch_expr Run2	cohort tcga	9	Succeeded	genes 800 na_frac 0 samples 1,082 clin_rows 1,084	1 vCPU · 6 GB	22 s
fetch_expr Run3	cohort metabric	9	Succeeded	genes 800 na_frac 0.000001274 samples 1,980 clin_rows 2,509	1 vCPU · 6 GB	26 s
pred Run1	—	9	Succeeded	mb_lum 1,398 mb_tnbc 320 tcga_lum 696 cv_r_gt03 65 pass_both 49 n_untested 0 tcga_basal 171 cv_r_median -0.01624 +7 more	4 vCPU · 12 GB	4 min 20 s
coll Run1	—	10	Succeeded	final_n 0 GDSC1_drugs 378 GDSC1_lines 970 GDSC2_drugs 286 GDSC2_lines 969 GDSC1_tested 370 GDSC2_tested 279 GDSC1_q01_neg 1 +16 more	1 vCPU · 4 GB	1 min 11 s

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